Package: Variation Graph¶
About: Tools for working with variation graphs.
Version: Latest
Docker Image: erictdawson/vg_d
Link: VG
vg¶
Example vg HTCondor job file¶
- runs vg via the docker universe
################################
# Example vg docker universe Job
################################
log = $(Cluster).$(Process).condor.vg.log
error = $(Cluster).$(Process).condor.vg.error
request_cpus = 1
request_memory = 1G
# Use the docker universe and specify the docker image (from Docker Hub by default)
universe = docker
docker_image = erictdawson/vg_d
# The executable is inside the container
executable = vg
arguments = construct -r refseq.fa -v sample.vcf
# We need to transfer files to use Docker
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
transfer_input_files = refseq.fa,sample.vcf
output = output.vg
queue